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1

8-oxoguanine lesioned B-DNA molecule complexed with repair enzyme hOGG1: A molecular dynamics study

Journal:

Journal of Computational Chemistry

Year:

2003

Language:

english

File:

PDF, 668 KB

english, 2003

2

Molecular dynamics simulation of thymine glycol-lesioned DNA reveals specific hydration at the lesion

Journal:

Journal of Computational Chemistry

Year:

2001

Language:

english

File:

PDF, 1.36 MB

english, 2001

3

Molecular dynamics simulation of clustered DNA damage sites containing 8-oxoguanine and abasic site

Hirofumi Fujimoto, Miroslav Pinak, Toshiyuki Nemoto, Peter O'Neill, Etsuo Kume, Kimiaki Saito, Hideaki Maekawa

Journal:

Journal of Computational Chemistry

Year:

2005

Language:

english

File:

PDF, 479 KB

english, 2005

4

A possible overestimation of the effect of acetylation on lysine residues in KQ mutant analysis

Hirofumi Fujimoto, Mariko Higuchi, Manabu Koike, Hirotaka Ode, Miroslav Pinak, Juraj Kotulic Bunta, Toshiyuki Nemoto, Takashi Sakudoh, Naoko Honda, Hideaki Maekawa, Kimiaki Saito, Kozo Tsuchida

Journal:

Journal of Computational Chemistry

Year:

2012

Language:

english

File:

PDF, 1.55 MB

english, 2012

5

DNA strand break: Structural and electrostatic properties studied by molecular dynamics simulation

Juraj Kotulic Bunta, Aatto Laaksonen, Miroslav Pinak, Toshiyuki Nemoto

Journal:

Computational Biology and Chemistry

Year:

2006

Language:

english

File:

PDF, 512 KB

english, 2006

6

Large scale MD simulation of 8-oxoguanine and AP site multiple lesioned DNA molecule combined with biomolecular visualization software

Hirofumi Fujimoto, Miroslav Pinak, Toshiyuki Nemoto, Kiyotaka Sakamoto, Kazuyuki Yamada, Yoshiyuki Hoshi, Etsuo Kume

Journal:

Journal of Molecular Structure: THEOCHEM

Year:

2004

Language:

english

File:

PDF, 620 KB

english, 2004

7

Impact of the 8-oxoguanine on B-DNA molecule—molecular dynamics study

Journal:

Journal of Molecular Structure: THEOCHEM

Year:

2002

Language:

english

File:

PDF, 396 KB

english, 2002

8

Electrostatic energy analysis of 8-oxoguanine DNA lesion—molecular dynamics study

Journal:

Computational Biology and Chemistry

Year:

2003

Language:

english

File:

PDF, 14.75 MB

english, 2003

9

Solvating, manipulating, damaging, and repairing DNA in a computer

Juraj Bunta, Martin Dahlberg, Leif Eriksson, Nikolai Korolev, Aatto Laaksonen, Raimo Lohikoski, Alexander Lyubartsev, Miroslav Pinak, Patric Schyman

Journal:

International Journal of Quantum Chemistry

Year:

2007

Language:

english

File:

PDF, 579 KB

english, 2007

10

Computational determination of radiation damage effects on DNA structure

Journal:

Central European Journal of Physics

Year:

2003

Language:

english

File:

PDF, 741 KB

english, 2003

11

Molecular dynamics of thymine dimer lesioned DNA and of T4 endonuclease V: role of electrostatic energy in recognition process

Journal:

Journal of Molecular Structure: THEOCHEM

Year:

1999

Language:

english

File:

PDF, 1.78 MB

english, 1999

12

Structural analysis of base mispairing in DNA containing oxidative guanine lesion

Hirofumi Fujimoto, Miroslav Pinak, Toshiyuki Nemoto, Juraj Kotulic Bunta

Journal:

Central European Journal of Physics

Year:

2007

Language:

english

File:

PDF, 624 KB

english, 2007

13

Theoretical Study of the Human DNA Repair Protein HOGG1 Activity

Schyman, Patric, Danielsson, Jonas, Pinak, Miroslav, Laaksonen, Aatto

Journal:

Journal of Physical Chemistry A

Year:

2005

Language:

english

File:

PDF, 270 KB

english, 2005

14

Hydration at the TD Damaged Site of DNA and its Role in the Formation of Complex with T4 Endonuclease V

Pinak, Miroslav

Journal:

Molecular Simulation

Year:

2000

Language:

english

File:

PDF, 1.50 MB

english, 2000

15

Modern Methods for Theoretical Physical Chemistry of Biopolymers || Enzymatic recognition of radiation-produced oxidative DNA lesion. Molecular dynamics approach

Pinak, Miroslav

Year:

2006

Language:

english

File:

PDF, 680 KB

english, 2006

16

1P566 Molecular dynamics simulation of clustered DNA damage site with DNA repair enzyme MutM(27. Molecular dynamics simulation,Poster Session,Abstract,Meeting Program of EABS & BSJ 2006)

Higuchi, Mariko, Pinak, Miroslav

Journal:

Seibutsu Butsuri

Year:

2006

Language:

english

File:

PDF, 150 KB

english, 2006

17

3P-094 Molecular dynamics simulation of cluster damaged DNA and hOGG1(Nucleic acid binding proteins,The 47th Annual Meeting of the Biophysical Society of Japan)

Higuchi, Mariko, Pinak, Miroslav

Journal:

Seibutsu Butsuri

Year:

2009

Language:

english

File:

PDF, 239 KB

english, 2009

18

2P-113 Molecular dynamics simulation of clustered DNA damage site including single strand brake(The 46th Annual Meeting of the Biophysical Society of Japan)

Higuchi, Mariko, Pinak, Miroslav

Journal:

Seibutsu Butsuri

Year:

2008

Language:

english

File:

PDF, 272 KB

english, 2008

19

3B1458 The affinity of close-two-damaged DNA and repair enzyme hOGG1(3B Nucleic acid binding proteins,The 49th Annual Meeting of the Biophysical Society of Japan)

Higuchi, Mariko, Pinak, Miroslav

Journal:

Seibutsu Butsuri

Year:

2011

Language:

english

File:

PDF, 250 KB

english, 2011

20

1P124 Study of the binding between clustered damage DNA and hOGG1 by molecular dynamics simulation(Nucleic acid binding proteins,The 48th Annual Meeting of the Biophysical Society of Japan)

Higuchi, Mariko, Pinak, Miroslav

Journal:

Seibutsu Butsuri

Year:

2010

Language:

english

File:

PDF, 236 KB

english, 2010

21

3PA115 Molecular dynamics of thymine base damaged DNA : thymine glycol & thymine dimer : structural and energetic origin of recongition and repair process

Pinak, Miroslav

Journal:

Seibutsu Butsuri

Year:

1999

Language:

english

File:

PDF, 294 KB

english, 1999

22

Impact of Radiation Damage on DNA Determined by Computational Simulation

PINAK, Miroslav

Journal:

Japanese Journal of Health Physics

Year:

2004

Language:

english

File:

PDF, 4.70 MB

english, 2004